Info • Exobasidium maculosum A7-4 v1.0

Status

[November 2017] The Exobasidium maculosum A7-4 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Exobasidium maculosum A7-4 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 22.22
Sequencing read coverage depth 145.33x
# of contigs 185
# of scaffolds 185
# of scaffolds >= 2Kbp 178
Scaffold N50 6
Scaffold L50 (Mbp) 0.87
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.67, 2.54, 2.44


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 19323 14999 77.6%
Ests est.fasta 89114092 85356564 95.8%


Gene Models FilteredModels2
length (bp) of: average median
gene 1807 1546
transcript 1659 1389
exon 542 275
intron 74 64
description:
protein length (aa) 496 405
exons per gene 3.06 3
# of gene models 10185


Collaborators

Marin Brewer, University of Georgia, Athens, GA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.