Status
Exophiala oligosperma was sequenced by the Broad Institute as part of the black yeast comparative genomics project. The genome and gene models of Exophiala oligosperma were downloaded from NCBI on June 1, 2016. JGI tools were used to add functional annotations to the gene models. Please note that this copy of the genome is not maintained by NCBI or the Broad Institute and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Summary statistics for the Exophiala oligosperma v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.22 |
| Sequencing read coverage depth | |
| # of contigs | 287 |
| # of scaffolds | 143 |
| # of scaffolds >= 2Kbp | 129 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 3.39 |
| # of gaps | 144 |
| % of scaffold length in gaps | 0.8% |
| Three largest Scaffolds (Mbp) | 4.47, 4.29, 4.12 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2090 | 1879 |
| transcript | 1949 | 1735 |
| exon | 743 | 426 |
| intron | 85 | 61 |
| description: | ||
| protein length (aa) | 488 | 429 |
| exons per gene | 2.62 | 2 |
| # of gene models | 13234 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Teixeira MM, Moreno LF, Stielow BJ, Muszewska A, Hainaut M, Gonzaga L, Abouelleil A, Patané JS, Priest M, Souza R, Young S, Ferreira KS, Zeng Q, da Cunha MM, Gladki A, Barker B, Vicente VA, de Souza EM, Almeida S, Henrissat B, Vasconcelos AT, Deng S, Voglmayr H, Moussa TA, Gorbushina A, Felipe MS, Cuomo CA, de Hoog GS
Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).
Stud Mycol. 2017 Mar;86():1-28. doi: 10.1016/j.simyco.2017.01.001
Teixeira MM, Moreno LF, Stielow BJ, Muszewska A, Hainaut M, Gonzaga L, Abouelleil A, Patané JS, Priest M, Souza R, Young S, Ferreira KS, Zeng Q, da Cunha MM, Gladki A, Barker B, Vicente VA, de Souza EM, Almeida S, Henrissat B, Vasconcelos AT, Deng S, Voglmayr H, Moussa TA, Gorbushina A, Felipe MS, Cuomo CA, de Hoog GS
Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).
Stud Mycol. 2017 Mar;86():1-28. doi: 10.1016/j.simyco.2017.01.001
Funding
This project was not sequenced at the JGI.
