Status
The Exobasidium vaccinii genome was sequenced using the Illumina platform and subsequently assembled with AllPathsLG release version R44849 (Gnerre et al., 2010).
Summary statistics for the Exobasidium vaccinii MPITM v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 16.99 |
| Sequencing read coverage depth | 96.3x |
| # of contigs | 246 |
| # of scaffolds | 119 |
| # of scaffolds >= 2Kbp | 83 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 1.52 |
| # of gaps | 127 |
| % of scaffold length in gaps | 0.7% |
| Three largest Scaffolds (Mbp) | 1.97, 1.96, 1.65 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | Assembled_RNAseq_reads | 19267 | 18880 | 98.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1821 | 1565 |
| transcript | 1660 | 1396 |
| exon | 595 | 302 |
| intron | 92 | 78 |
| description: | ||
| protein length (aa) | 495 | 407 |
| exons per gene | 2.79 | 2 |
| # of gene models | 7453 |
Collaborators
- Joey Spatafora, Oregon State University, USA
- Gunther Doehlemann, MPI Marburg, Germany
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
