Status
[February 2024] The Fusarium dimerum 206A_c13_1 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.49 |
| Sequencing read coverage depth | 166.95x |
| # of contigs | 65 |
| # of scaffolds | 52 |
| # of scaffolds >= 2Kbp | 34 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 2.37 |
| # of gaps | 13 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.35, 3.87, 3.83 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 49574 | 49097 | 99.0% |
| Ests | est.fasta | 266808744 | 263742663 | 98.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1842 | 1605 |
| transcript | 1704 | 1488 |
| exon | 590 | 361 |
| intron | 76 | 55 |
| description: | ||
| protein length (aa) | 486 | 408 |
| exons per gene | 2.89 | 2 |
| # of gene models | 13482 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
- JGI EcoGroup Portals: Endophytic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
