Info • Fellomyces penicillatus Phaff54-35 v1.0

Status

[April 2016] The Fellomyces penicillatus Phaff54-35 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011).

Summary statistics for the Fellomyces penicillatus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.05
Sequencing read coverage depth 97.6x
# of contigs 37
# of scaffolds 22
# of scaffolds >= 2Kbp 17
Scaffold N50 3
Scaffold L50 (Mbp) 2.83
# of gaps 15
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 4.22, 4.21, 2.83


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 25442 24987 98.2%
Ests est.fasta 100110998 99900898 99.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 2027 1805
transcript 1697 1480
exon 276 161
intron 66 56
description:
protein length (aa) 501 428
exons per gene 6.14 5
# of gene models 8340


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.