Info • Fennellomyces sp. T-0311 v1.0

Status

[January 2017] The Fennellomyces sp. T-0311 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fennellomyces sp. T-0311 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.90
Sequencing read coverage depth 185.44x
# of contigs 236
# of scaffolds 236
# of scaffolds >= 2Kbp 233
Scaffold N50 20
Scaffold L50 (Mbp) 0.75
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.01, 1.70, 1.59


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54197 51681 95.4%
Ests est.fasta 110506490 109070790 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1605 1393
transcript 1350 1143
exon 288 174
intron 71 60
description:
protein length (aa) 395 324
exons per gene 4.69 4
# of gene models 14128


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Wang Y, Chang Y, Ortañez J, Peña JF, Carter-House D, Reynolds NK, Smith ME, Benny G, Mondo SJ, Salamov A, Lipzen A, Pangilinan J, Guo J, LaButti K, Andreopolous W, Tritt A, Keymanesh K, Yan M, Barry K, Grigoriev IV, Spatafora JW, Stajich JE
Divergent evolution of early terrestrial fungi reveals the evolution of Mucormycosis pathogenicity factors.
Genome Biol Evol. 2023 Mar 17;():. doi: 10.1093/gbe/evad046

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.