Info • Fimicolochytrium jonesii JEL569 v1.0

Status

[December 2018] The Fimicolochytrium jonesii JEL569 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fimicolochytrium jonesii JEL569 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.62
Sequencing read coverage depth 574.62x
# of contigs 57
# of scaffolds 57
# of scaffolds >= 2Kbp 56
Scaffold N50 12
Scaffold L50 (Mbp) 0.80
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.24, 2.16, 1.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40039 37658 94.1%
Ests est.fasta 188519866 187024215 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 2004 1697
transcript 1690 1403
exon 375 207
intron 91 75
description:
protein length (aa) 477 372
exons per gene 4.51 3
# of gene models 10067


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, Tritt A, Riley R, Hundley H, Johnson J, Lipzen A, Barry K, Lang BF, Cuomo CA, Buchler NE, Grigoriev IV, Spatafora JW, Stajich JE, James TY
Diploid-dominant life cycles characterize the early evolution of Fungi.
Proc Natl Acad Sci U S A. 2022 Sep 6;119(36):e2116841119. doi: 10.1073/pnas.2116841119

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.