Info • Fistulina hepatica v1.0


The Fistulina hepatica genome was sequenced using the Illumina platform and assembledwith AllPathsLG. The genome was annotated with the JGI annotation pipeline and custom analyses.  No ESTs were available so none were used in the annotation.

Summary statistics for the Fistulina hepatica v1.0 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 33.85
Sequencing read coverage depth 137.9
# of contigs 914
# of scaffolds 588
# of scaffolds >= 2Kbp 414
Scaffold N50 27
Scaffold L50 (Mbp) 0.35
# of gaps 326
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 1.55, 1.28, 1.23

Gene Models FilteredModels1
length (bp) of: average median
gene 1601 1316
transcript 1231 1008
exon 215 135
intron 80 58
protein length (aa) 410 336
exons per gene 5.72 4
# of gene models 11244

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.