Info • Fistulifera solaris JPCC DA0580


The Fistulifera solaris JPCC DA0580 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on October 31, 2019. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 9206 models and the generation of the FilteredModels2 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 49.74
Sequencing read coverage depth 24x
# of contigs 1304
# of scaffolds 295
# of scaffolds >= 2Kbp 295
Scaffold N50 49
Scaffold L50 (Mbp) 0.33
# of gaps 1009
% of scaffold length in gaps 1.4%
Three largest Scaffolds (Mbp) 0.90, 0.85, 0.76

Gene Models FilteredModels2
length (bp) of: average median
gene 2108 1785
transcript 2008 1709
exon 1139 928
intron 133 81
protein length (aa) 491 401
exons per gene 1.76 1
# of gene models 14395

Genome Reference(s)



This project was not sequenced at the JGI.