Info • Flavodon flavus 38 v1.0


[December 2018] The Flavodon flavus 38 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Flavodon flavus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.51
Sequencing read coverage depth 647.7x
# of contigs 29
# of scaffolds 29
# of scaffolds >= 2Kbp 28
Scaffold N50 5
Scaffold L50 (Mbp) 3.25
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.53, 4.31, 3.49

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 80605 79150 98.2%
Ests est.fasta 240504774 239603261 99.6%

Gene Models FilteredModels1
length (bp) of: average median
gene 1986 1744
transcript 1618 1405
exon 247 151
intron 68 59
protein length (aa) 467 388
exons per gene 6.55 5
# of gene models 11282


Oded Yarden, The Hebrew University of Jerusalem, Rehovot, Israel

Mónica Medina, The Pennsylvania State University, PA, USA

Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.