Our systems will be offline for scheduled maintenance in our facility on Wed Aug 24 from 8am until 6pm PDT.
Info • Fusarium oxysporum f.sp. basilici Amherst-23 v1.0

Status

[March 2022] The Fusarium oxysporum f.sp. basilici Amherst-23 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 58.00
Sequencing read coverage depth 19.08x
# of contigs 70
# of scaffolds 70
# of scaffolds >= 2Kbp 68
Scaffold N50 6
Scaffold L50 (Mbp) 4.25
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.55, 5.57, 5.07


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52115 50160 96.2%
Ests est.fasta 217660493 216493128 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1778 1541
transcript 1622 1407
exon 554 344
intron 83 56
description:
protein length (aa) 468 390
exons per gene 2.93 2
# of gene models 18527


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.