Status
[June 2022] The Fusarium oxysporum f.sp. basilici Amherst-72 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 58.12 |
| Sequencing read coverage depth | 53.87x |
| # of contigs | 56 |
| # of scaffolds | 56 |
| # of scaffolds >= 2Kbp | 53 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 3.65 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.56, 5.57, 5.07 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 57727 | 55549 | 96.2% |
| Ests | est.fasta | 149258166 | 148737956 | 99.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1760 | 1533 |
| transcript | 1612 | 1404 |
| exon | 554 | 343 |
| intron | 79 | 56 |
| description: | ||
| protein length (aa) | 461 | 385 |
| exons per gene | 2.91 | 2 |
| # of gene models | 18933 |
Collaborators
- Jeffrey Coleman, Auburn University, USA.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
- JGI EcoGroup Portals: Plant Pathogens Plant Pathogenic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
