We will have a brief downtime on Tuesday May 28 between 8:45 and 9:30 am PDT due to network equipment maintenance.
Info • Fomitiporia mediterranea v1.0

Status

This draft assembly was produced using Roche (454), Sanger Fosmids, and shredded consensus from velvet assembled illumina data. Newbler was the final assembler.

Summary statistics for the Fomitiporia mediterranea v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 63.35
Sequencing read coverage depth 39.35
# of contigs 5766
# of scaffolds 1412
# of scaffolds >= 2Kbp 1411
Scaffold N50 6
Scaffold L50 (Mbp) 4.29
# of gaps 2177
% of scaffold length in gaps 10.4%
Three largest Scaffolds (Mbp) 9.60, 4.72, 4.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs 1287882 1230873 95.6%
Other EST_clusters 13117 11884 90.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1870 1541
transcript 1461 1184
exon 241 141
intron 83 61
description:
protein length (aa) 428 345
exons per gene 6.06 5
# of gene models 11333


Collaborators

  • PI: Igor Grigoriev, DOE Joint Genome Institute
  • David Hibbett, Clark University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.