Info • Fomitopsis pinicola SS1 v1.0
Please note that this organism is for archival use only. Please see the current Fomitopsis pinicola FP-58527 SS1 v3.0 site for the latest data and information.

Status

v1.0 (October, 2010): The assembly release version 1.0 of Fomitopsis pinicola was generated using the Newbler and Velvet assembler and Roche 454, Illumina Solexa and Fosmid Sanger input data.

Summary statistics for the Fomitopsis pinicola SS1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 46.30
Sequencing read coverage depth 58.37
# of contigs 2785
# of scaffolds 1117
# of scaffolds >= 2Kbp 1117
Scaffold N50 25
Scaffold L50 (Mbp) 0.51
# of gaps 834
% of scaffold length in gaps 9.2%
Three largest Scaffolds (Mbp) 2.58, 1.88, 1.68


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs 776365 739060 95.2%
Other Clusters 11512 10723 93.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1689 1373
transcript 1306 1074
exon 238 149
intron 87 57
description:
protein length (aa) 396 323
exons per gene 5.50 4
# of gene models 14724


Collaborators

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.