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Info • Fomitopsis pinicola FP-58527 SS1 v3.0

Status

v3.0 (July 2012): The assembly release version 3.0 of Fomitopsis pinicola was generated using the Newbler and Velvet assembler and Roche 454, Illumina Solexa, Fosmid Sanger and PacBio input data.

Summary statistics for the Fomitopsis pinicola FP-58527 SS1 v3.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 41.61
Sequencing read coverage depth 85.9x
# of contigs 988
# of scaffolds 504
# of scaffolds >= 2Kbp 382
Scaffold N50 37
Scaffold L50 (Mbp) 0.37
# of gaps 484
% of scaffold length in gaps 4.8%
Three largest Scaffolds (Mbp) 1.38, 1.15, 1.00


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs 776365 742135 95.6%
Other Clusters 11512 10815 93.9%


Gene Models FilteredModels2
length (bp) of: average median
gene 1652 1351
transcript 1281 1055
exon 230 144
intron 83 57
description:
protein length (aa) 405 332
exons per gene 5.56 4
# of gene models 13885


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.