Info • Fomitopsis rosea Sig1Fomros20-ss v1.0


[March 2018] The Fomitopsis rosea Sig1Fomros20-ss genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fomitopsis rosea v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.74
Sequencing read coverage depth 129.4x
# of contigs 1213
# of scaffolds 1088
# of scaffolds >= 2Kbp 897
Scaffold N50 108
Scaffold L50 (Mbp) 0.09
# of gaps 125
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 0.40, 0.38, 0.38

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 75632 72397 95.7%
Ests est.fasta 116929152 114490550 97.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1851 1601
transcript 1517 1308
exon 256 156
intron 70 57
protein length (aa) 437 359
exons per gene 5.94 5
# of gene models 12672


Sundy Maurice, University of Oslo, Norway

Håvard Kauserud, University of Oslo, Norway

Francis M. Martin, INRA, France.


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.