Info • Fonsecaea nubica CBS 269.64


The genome sequence and gene prediction of Fonsecaea nubica CBS 269.64 have not been determined by the JGI, but were downloaded from NCBI on June 1, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Assembly Method :: SPAdes v. 3.6.2
Sequencing Technology :: Illumina MiSeq; IonTorrent


Summary statistics for the Fonsecaea nubica release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.79
Sequencing read coverage depth 85.0x
# of contigs 259
# of scaffolds 258
# of scaffolds >= 2Kbp 240
Scaffold N50 36
Scaffold L50 (Mbp) 0.30
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.19, 0.73, 0.69

Gene Models ExternalModels
length (bp) of: average median
gene 1687 1456
transcript 1537 1338
exon 608 330
intron 100 62
protein length (aa) 512 446
exons per gene 2.53 2
# of gene models 11681

Genome Reference(s)


This project was not sequenced at the JGI.