Status
The genome sequence and gene prediction of Fonsecaea nubica CBS 269.64 have not been determined by the JGI, but were downloaded from NCBI on June 1, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Assembly Method :: SPAdes v. 3.6.2
Sequencing Technology :: Illumina MiSeq; IonTorrent
Summary statistics for the Fonsecaea nubica release are
below.
Genome Assembly | |
Genome Assembly size (Mbp) | 33.79 |
Sequencing read coverage depth | 85.0x |
# of contigs | 259 |
# of scaffolds | 258 |
# of scaffolds >= 2Kbp | 240 |
Scaffold N50 | 36 |
Scaffold L50 (Mbp) | 0.30 |
# of gaps | 1 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 1.19, 0.73, 0.69 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1687 | 1456 |
transcript | 1537 | 1338 |
exon | 608 | 330 |
intron | 100 | 62 |
description: | ||
protein length (aa) | 512 | 446 |
exons per gene | 2.53 | 2 |
# of gene models | 11681 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Costa FF, de Hoog S, Raittz RT, Weiss VA, Leão AC, Bombassaro A, Sun J, Moreno LF, Souza EM, Pedrosa FO, Steffens MB, Baura V, Tadra-Sfeir MZ, Balsanelli E, Najafzadeh MJ, Gomes RR, Felipe MS, Teixeira M, Santos GD, Xi L, Alves de Castro MA, Vicente VA
Draft Genome Sequence of Fonsecaea nubica Strain CBS 269.64, Causative Agent of Human Chromoblastomycosis.
Genome Announc. 2016 Aug 4;4(4):. doi: 10.1128/genomeA.00735-16
Costa FF, de Hoog S, Raittz RT, Weiss VA, Leão AC, Bombassaro A, Sun J, Moreno LF, Souza EM, Pedrosa FO, Steffens MB, Baura V, Tadra-Sfeir MZ, Balsanelli E, Najafzadeh MJ, Gomes RR, Felipe MS, Teixeira M, Santos GD, Xi L, Alves de Castro MA, Vicente VA
Draft Genome Sequence of Fonsecaea nubica Strain CBS 269.64, Causative Agent of Human Chromoblastomycosis.
Genome Announc. 2016 Aug 4;4(4):. doi: 10.1128/genomeA.00735-16
Funding
This project was not sequenced at the JGI.