Info • Fusarium oxysporum f. sp. pisi F109 v1.0

Status

[October 2021] The Fusarium oxysporum f. sp. pisi F109 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 67.09
Sequencing read coverage depth 44.90x
# of contigs 155
# of scaffolds 155
# of scaffolds >= 2Kbp 154
Scaffold N50 21
Scaffold L50 (Mbp) 1.02
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.92, 2.72, 2.39


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 87599 57626 65.8%
Ests est.fasta 348328173 344432478 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1724 1481
transcript 1564 1347
exon 544 333
intron 87 56
description:
protein length (aa) 451 373
exons per gene 2.88 2
# of gene models 19272


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.