Info • Fusarium oxysporum f. sp. pisi F79 v1.0

Status

[October 2021] The Fusarium oxysporum f. sp. pisi F79 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 67.02
Sequencing read coverage depth 29.03x
# of contigs 194
# of scaffolds 193
# of scaffolds >= 2Kbp 192
Scaffold N50 23
Scaffold L50 (Mbp) 0.93
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.58, 2.56, 1.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57841 51842 89.6%
Ests est.fasta 186244166 185165503 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1730 1493
transcript 1573 1363
exon 546 337
intron 86 56
description:
protein length (aa) 453 378
exons per gene 2.88 2
# of gene models 19180


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.