Info • Fusarium oxysporum F10-03 v1.0


[March 2020] The Fusarium oxysporum F10-03 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.56
Sequencing read coverage depth 253.69x
# of contigs 22
# of scaffolds 22
# of scaffolds >= 2Kbp 22
Scaffold N50 5
Scaffold L50 (Mbp) 5.10
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.53, 5.69, 5.61

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57858 56492 97.6%
Ests est.fasta 144343922 143821250 99.6%

Gene Models FilteredModels1
length (bp) of: average median
gene 1796 1554
transcript 1630 1422
exon 534 327
intron 83 56
protein length (aa) 475 398
exons per gene 3.05 3
# of gene models 17114


H. Corby Kistler, Department of Plant Pathology, University of Minnesota, MN


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.