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Info • Fusarium oxysporum F10-04 v1.0

Status

[January 2020] The Fusarium oxysporum F10-04 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 57.88
Sequencing read coverage depth 161.16x
# of contigs 51
# of scaffolds 51
# of scaffolds >= 2Kbp 51
Scaffold N50 5
Scaffold L50 (Mbp) 5.79
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.52, 7.33, 6.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 67551 64261 95.1%
Ests est.fasta 281394556 279698140 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1773 1541
transcript 1607 1403
exon 530 325
intron 84 56
description:
protein length (aa) 467 389
exons per gene 3.03 2
# of gene models 18482


Collaborators

H. Corby Kistler, Department of Plant Pathology, University of Minnesota, MN

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.