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Info • Fusarium oxysporum F10-08 v1.0

Status

[March 2020] The Fusarium oxysporum F10-08 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.96
Sequencing read coverage depth 165.49x
# of contigs 27
# of scaffolds 27
# of scaffolds >= 2Kbp 27
Scaffold N50 6
Scaffold L50 (Mbp) 4.32
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.46, 5.44, 5.30


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 64822 62339 96.2%
Ests est.fasta 200308120 199121531 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1779 1544
transcript 1614 1405
exon 532 326
intron 84 56
description:
protein length (aa) 470 391
exons per gene 3.03 2
# of gene models 17958


Collaborators

H. Corby Kistler, Department of Plant Pathology, University of Minnesota, MN

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.