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Info • Fusarium oxysporum F10-10 v1.0

Status

[January 2020] The Fusarium oxysporum F10-10 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.05
Sequencing read coverage depth 165.73x
# of contigs 16
# of scaffolds 16
# of scaffolds >= 2Kbp 16
Scaffold N50 6
Scaffold L50 (Mbp) 3.92
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.62, 5.60, 5.21


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44702 42840 95.8%
Ests est.fasta 50615049 50275783 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1768 1524
transcript 1591 1380
exon 522 317
intron 89 57
description:
protein length (aa) 472 395
exons per gene 3.05 3
# of gene models 16942


Collaborators

H. Corby Kistler, Department of Plant Pathology, University of Minnesota, MN

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.