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Info • Fusarium oxysporum F2-01 v1.0

Status

[January 2020] The Fusarium oxysporum F2-01 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum F2-01 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.59
Sequencing read coverage depth 277.7x
# of contigs 33
# of scaffolds 33
# of scaffolds >= 2Kbp 33
Scaffold N50 6
Scaffold L50 (Mbp) 3.64
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.48, 5.96, 5.70


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 59143 57220 96.7%
Ests est.fasta 206217485 205354752 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1776 1548
transcript 1611 1411
exon 530 324
intron 83 56
description:
protein length (aa) 469 392
exons per gene 3.04 2
# of gene models 17966


Collaborators

H. Corby Kistler, Department of Plant Pathology, University of Minnesota, MN

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.