Info • Fusarium oxysporum F2-02 v1.0


[January 2020] The Fusarium oxysporum F2-02 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.42
Sequencing read coverage depth 238.96x
# of contigs 28
# of scaffolds 28
# of scaffolds >= 2Kbp 28
Scaffold N50 5
Scaffold L50 (Mbp) 5.34
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.32, 6.47, 5.73

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57524 55561 96.6%
Ests est.fasta 191241213 190200097 99.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1780 1553
transcript 1614 1419
exon 530 326
intron 83 56
protein length (aa) 470 394
exons per gene 3.05 2
# of gene models 17736


H. Corby Kistler, Department of Plant Pathology, University of Minnesota, MN


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.