Info • Fusarium oxysporum F2-04 v1.0


[January 2020] The Fusarium oxysporum F2-04 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.63
Sequencing read coverage depth 228.77x
# of contigs 35
# of scaffolds 35
# of scaffolds >= 2Kbp 35
Scaffold N50 6
Scaffold L50 (Mbp) 4.52
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.96, 5.28, 4.80

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 59493 57095 96.0%
Ests est.fasta 29616433 29438309 99.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1773 1537
transcript 1609 1405
exon 532 327
intron 83 56
protein length (aa) 471 396
exons per gene 3.03 2
# of gene models 17876


H. Corby Kistler, Department of Plant Pathology, University of Minnesota, MN


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.