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Info • Fusarium oxysporum F2-06 v1.0

Status

[January 2020] The Fusarium oxysporum F2-06 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.31
Sequencing read coverage depth 138.6x
# of contigs 32
# of scaffolds 32
# of scaffolds >= 2Kbp 32
Scaffold N50 5
Scaffold L50 (Mbp) 4.75
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.21, 6.46, 5.92


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 55405 53958 97.4%
Ests est.fasta 159554707 158939092 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1785 1557
transcript 1613 1414
exon 532 327
intron 87 56
description:
protein length (aa) 470 394
exons per gene 3.03 2
# of gene models 17672


Collaborators

H. Corby Kistler, Department of Plant Pathology, University of Minnesota, MN

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.