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Info • Fusarium oxysporum F2-07 v1.0


[January 2020] The Fusarium oxysporum F2-07 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum F2-07 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.96
Sequencing read coverage depth 172.85x
# of contigs 40
# of scaffolds 40
# of scaffolds >= 2Kbp 40
Scaffold N50 5
Scaffold L50 (Mbp) 4.71
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.46, 5.91, 5.35

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 58018 56316 97.1%
Ests est.fasta 170079721 167863502 98.7%

Gene Models FilteredModels1
length (bp) of: average median
gene 1784 1551
transcript 1620 1420
exon 533 327
intron 83 56
protein length (aa) 471 394
exons per gene 3.04 2
# of gene models 17461


H. Corby Kistler, Department of Plant Pathology, University of Minnesota, MN


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.