Info • Fusarium oxysporum MRL8996 v1.0

Status

[February 2020] The Fusarium oxysporum MRL8996 genome was sequenced by Ayhan,D.H., Yang,H., Pearlman,E. and Ma,L.-J. with Illumina and PacBio, and assembled with SPAdes v. 3.9.1. The assembly was annotated using the JGI Annotation Pipeline.

Summary statistics for the Fusarium oxysporum MRL8996 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.07
Sequencing read coverage depth 184.0x
# of contigs 250
# of scaffolds 250
# of scaffolds >= 2Kbp 231
Scaffold N50 10
Scaffold L50 (Mbp) 1.73
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.65, 4.58, 2.81


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47130 45641 96.8%
Ests est.fasta 190612210 189523972 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1775 1533
transcript 1606 1386
exon 531 323
intron 86 56
description:
protein length (aa) 473 395
exons per gene 3.02 2
# of gene models 16631


Collaborators

Li-Jun Ma, University of Massachusetts Amherst, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Ayhan DH, Abbondante S, Martínez-Soto D, Wu S, Rodriguez-Vargas R, Milo S, Rickelton K, Sohrab V, Kotera S, Arie T, Marshall ME, Rocha MC, Haridas S, Grigoriev IV, Shlezinger N, Pearlman E, Ma L-J
Host-specific adaptation in Fusarium oxysporum correlates with distinct accessory chromosome content in human and plant pathogenic strains.
mBio. 2025 Jun 26;():e0095125. doi: 10.1128/mbio.00951-25

Funding

This project was not sequenced at the JGI.