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Info • Fusarium oxysporum f. sp. matthiolae PHW726


[May 2020] The Fusarium oxysporum f. sp. matthiolae strain PHW726 genome was assembled and publised by Yu et. al. (2020) using a combination of PacBio (21X coverage) and Illumina sequencing (119X coverage). The JGI Fungal Annotation Pipeline was used to predict gene models and provide functional annotation. This work was supported by the National Science Foundation (IOS-1652641).

Summary statistics for the Fusarium oxysporum f. sp. matthiolae PHW726 release are below.
Genome Assembly
Genome Assembly size (Mbp) 57.22
Sequencing read coverage depth See Above
# of contigs 582
# of scaffolds 582
# of scaffolds >= 2Kbp 502
Scaffold N50 18
Scaffold L50 (Mbp) 0.77
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.56, 2.87, 2.26

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47130 39879 84.6%
Ests est.fasta 190612210 180950067 94.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1707 1462
transcript 1537 1325
exon 511 306
intron 87 56
protein length (aa) 464 386
exons per gene 3.01 2
# of gene models 17996


  • Li-Jun Ma, University of Massachusetts Amherst, USA


This project was not sequenced at the JGI.