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Info • Fusarium oxysporum f.sp. basilici Amherst-33 v1.0

Status

[March 2022] The Fusarium oxysporum f.sp. basilici Amherst-33 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 56.73
Sequencing read coverage depth 126.52x
# of contigs 120
# of scaffolds 120
# of scaffolds >= 2Kbp 118
Scaffold N50 17
Scaffold L50 (Mbp) 1.10
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.84, 2.44, 2.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48150 45959 95.4%
Ests est.fasta 103298997 102124235 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1773 1537
transcript 1618 1404
exon 546 334
intron 81 56
description:
protein length (aa) 472 393
exons per gene 2.97 2
# of gene models 18076


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.