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Info • Friedmanniomyces endolithicus CCFEE 5311

Status

The Friedmanniomyces endolithicus CCFEE 5311 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Apr 17, 2021. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 46.75
Sequencing read coverage depth 135.0x
# of contigs 446
# of scaffolds 418
# of scaffolds >= 2Kbp 370
Scaffold N50 39
Scaffold L50 (Mbp) 0.38
# of gaps 28
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.11, 1.07, 1.06


Gene Models ExternalModels
length (bp) of: average median
gene 1621 1323
transcript 1468 1200
exon 642 338
intron 121 64
description:
protein length (aa) 489 400
exons per gene 2.29 2
# of gene models 18027


Collaborators

Genome Reference(s)

Funding

This project was not sequenced at the JGI.