Status
The Friedmanniomyces endolithicus CCFEE 5311 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Apr 17, 2021. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Genome Assembly | |
Genome Assembly size (Mbp) | 46.75 |
Sequencing read coverage depth | 135.0x |
# of contigs | 446 |
# of scaffolds | 418 |
# of scaffolds >= 2Kbp | 370 |
Scaffold N50 | 39 |
Scaffold L50 (Mbp) | 0.38 |
# of gaps | 28 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 1.11, 1.07, 1.06 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1621 | 1323 |
transcript | 1468 | 1200 |
exon | 642 | 338 |
intron | 121 | 64 |
description: | ||
protein length (aa) | 489 | 400 |
exons per gene | 2.29 | 2 |
# of gene models | 18027 |
Collaborators
- Jason E. Stajich, University of California, Riverside
- Claudia Coleine, University of Tuscia
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Coleine C, Masonjones S, Sterflinger K, Onofri S, Selbmann L, Stajich JE
Peculiar genomic traits in the stress-adapted cryptoendolithic Antarctic fungus Friedmanniomyces endolithicus.
Fungal Biol. 2020 May;124(5):458-467. doi: 10.1016/j.funbio.2020.01.005
Coleine C, Masonjones S, Sterflinger K, Onofri S, Selbmann L, Stajich JE
Peculiar genomic traits in the stress-adapted cryptoendolithic Antarctic fungus Friedmanniomyces endolithicus.
Fungal Biol. 2020 May;124(5):458-467. doi: 10.1016/j.funbio.2020.01.005
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Dothideomycetidae
Funding
This project was not sequenced at the JGI.