Status
[February 2024] The Fusarium sporodochium 7-200 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.07 |
| Sequencing read coverage depth | 160.34x |
| # of contigs | 75 |
| # of scaffolds | 64 |
| # of scaffolds >= 2Kbp | 52 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 3.36 |
| # of gaps | 11 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 7.45, 5.03, 3.91 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 49072 | 48547 | 98.9% |
| Ests | est.fasta | 178383471 | 176877008 | 99.2% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1859 | 1615 |
| transcript | 1714 | 1491 |
| exon | 583 | 356 |
| intron | 77 | 56 |
| description: | ||
| protein length (aa) | 489 | 410 |
| exons per gene | 2.94 | 2 |
| # of gene models | 12941 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
- JGI EcoGroup Portals: Plant Pathogens Plant Pathogenic Fungi Endophytic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
