Info • Fusarium avenaceum NRRL 54939 v1.0

Status

[January 2023] The Fusarium avenaceum NRRL 54939 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 42.26
Sequencing read coverage depth 70.57x
# of contigs 12
# of scaffolds 12
# of scaffolds >= 2Kbp 12
Scaffold N50 3
Scaffold L50 (Mbp) 6.54
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 10.86, 7.16, 6.54


Please note RNA data suffers from contamination. Data set has good read mapping stats, but unusually low contig mapping stats. When all reads are mapped to the zero assembly accuracy contigs, only 2.28% of reads map. Therefore a very small read percentage is contributing to the creation of unmatched contigs. Unmapped RNA reads are hitting organisms in the target genus and bacteria.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 65899 47728 72.4%
Ests est.fasta 333498121 330743330 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1880 1629
transcript 1747 1512
exon 611 384
intron 73 56
description:
protein length (aa) 492 406
exons per gene 2.86 2
# of gene models 14299


Collaborators

  • Li-Jun Ma, University of Massachusetts Amherst, USA
  • Robert H. Proctor, National Center for Agricultural Utilization Research, USDA-ARS.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.