Info • Fusarium commune MPI-SDFR-AT-0072 v1.0

Status

[May 2018] The Fusarium sp. MPI-SDFR-AT-0072 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 48.37
Sequencing read coverage depth 181.01x
# of contigs 19
# of scaffolds 19
# of scaffolds >= 2Kbp 19
Scaffold N50 5
Scaffold L50 (Mbp) 4.72
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.57, 5.27, 4.98


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46703 42896 91.8%
Ests est.fasta 259022716 256828848 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1809 1557
transcript 1644 1416
exon 548 337
intron 84 56
description:
protein length (aa) 477 398
exons per gene 3.00 2
# of gene models 15731


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.