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Info • Fusarium culmorum UK99

Status

The Fusarium culmorum UK99 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.

Summary statistics for the Fusarium culmorum UK99 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.93
Sequencing read coverage depth
# of contigs 2707
# of scaffolds 6
# of scaffolds >= 2Kbp 6
Scaffold N50 2
Scaffold L50 (Mbp) 9.18
# of gaps 2701
% of scaffold length in gaps 7.0%
Three largest Scaffolds (Mbp) 11.80, 9.18, 7.96


Gene Models ExternalModels
length (bp) of: average median
gene 1865 1521
transcript 1606 1341
exon 526 316
intron 129 57
description:
protein length (aa) 490 402
exons per gene 3.05 3
# of gene models 12472


Genome Reference(s)

Funding

This project was not sequenced at the JGI.