Status
The Fusarium culmorum UK99 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.
Summary statistics for the Fusarium culmorum UK99 release
are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 41.93 |
Sequencing read coverage depth | |
# of contigs | 2707 |
# of scaffolds | 6 |
# of scaffolds >= 2Kbp | 6 |
Scaffold N50 | 2 |
Scaffold L50 (Mbp) | 9.18 |
# of gaps | 2701 |
% of scaffold length in gaps | 7.0% |
Three largest Scaffolds (Mbp) | 11.80, 9.18, 7.96 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1865 | 1521 |
transcript | 1606 | 1341 |
exon | 526 | 316 |
intron | 129 | 57 |
description: | ||
protein length (aa) | 490 | 402 |
exons per gene | 3.05 | 3 |
# of gene models | 12472 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Urban M, King R, Andongabo A, Maheswari U, Pedro H, Kersey P, Hammond-Kosack K
First Draft Genome Sequence of a UK Strain (UK99) of Fusarium culmorum.
Genome Announc. 2016 Sep 15;4(5):. doi: 10.1128/genomeA.00771-16
Urban M, King R, Andongabo A, Maheswari U, Pedro H, Kersey P, Hammond-Kosack K
First Draft Genome Sequence of a UK Strain (UK99) of Fusarium culmorum.
Genome Announc. 2016 Sep 15;4(5):. doi: 10.1128/genomeA.00771-16
Links
- JGI EcoGroup Portals: Plant pathogens
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
Funding
This project was not sequenced at the JGI.