Info • Fusarium sp. FIESC 12 MPI-CAGE-AA-0113 v1.0

Status

[April 2018] The Fusarium sp. FIESC 12 MPI-CAGE-AA-0113 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 40.33
Sequencing read coverage depth 172.12x
# of contigs 15
# of scaffolds 15
# of scaffolds >= 2Kbp 15
Scaffold N50 3
Scaffold L50 (Mbp) 5.43
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.72, 6.98, 5.43


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32565 31729 97.4%
Ests est.fasta 127082429 110401457 86.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1824 1583
transcript 1688 1471
exon 599 377
intron 77 55
description:
protein length (aa) 482 405
exons per gene 2.82 2
# of gene models 13580


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.