Info • Fusarium equiseti NRRL 66338 v1.0

Status

[November 2022] The Fusarium equiseti NRRL 66338 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 41.08
Sequencing read coverage depth 133.45x
# of contigs 13
# of scaffolds 13
# of scaffolds >= 2Kbp 13
Scaffold N50 3
Scaffold L50 (Mbp) 5.46
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.35, 7.07, 5.46


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52530 51761 98.5%
Ests est.fasta 347421491 345664137 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1881 1618
transcript 1743 1504
exon 619 389
intron 78 55
description:
protein length (aa) 488 402
exons per gene 2.82 2
# of gene models 13772


Collaborators

  • Li-Jun Ma, University of Massachusetts Amherst, USA
  • Robert H. Proctor, National Center for Agricultural Utilization Research, USDA-ARS.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.