Status
[October 2022] The Fusarium graminearum PH-1 v2.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.68 |
| Sequencing read coverage depth | 1573.22x |
| # of contigs | 4 |
| # of scaffolds | 4 |
| # of scaffolds >= 2Kbp | 4 |
| Scaffold N50 | 2 |
| Scaffold L50 (Mbp) | 9.00 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 11.76, 9.00, 8.12 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 177396 | 154798 | 87.3% |
| Ests | est.fasta | 21422313 | 20671672 | 96.5% |
| Other | IsoSeq_hq_reads_HPWAT | 22912 | 22752 | 99.3% |
| Other | IsoSeq_hq_reads_HWYXO | 69299 | 68184 | 98.4% |
| Other | RNAseq_contigs1 | 60654 | 39636 | 65.3% |
| Other | RNAseq_contigs2 | 24531 | 24226 | 98.8% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1917 | 1656 |
| transcript | 1781 | 1533 |
| exon | 625 | 392 |
| intron | 75 | 56 |
| description: | ||
| protein length (aa) | 493 | 408 |
| exons per gene | 2.85 | 2 |
| # of gene models | 12680 |
Collaborators
- Michael Freitag, Department of Biochemistry & Biophysics, Oregon State University
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
