Info • Fusarium graminearum Z3639 v2.0

Status

[September 2020] The Fusarium graminearum Z3639 v2.0 genome was sequenced with PacBio, assembled with MECAT, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium graminearum Z3639 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.17
Sequencing read coverage depth 133.17x
# of contigs 13
# of scaffolds 13
# of scaffolds >= 2Kbp 13
Scaffold N50 2
Scaffold L50 (Mbp) 9.05
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 11.83, 9.05, 8.06


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 24652 24151 98.0%
Ests est.fasta 305971956 305645070 99.9%


Gene Models FilteredModels2
length (bp) of: average median
gene 1889 1625
transcript 1729 1491
exon 579 350
intron 83 56
description:
protein length (aa) 502 416
exons per gene 2.99 2
# of gene models 12233


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.