Status
The Fusarium langsethiae Fl201059 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.
Genome Assembly | |
Genome Assembly size (Mbp) | 37.54 |
Sequencing read coverage depth | |
# of contigs | 1948 |
# of scaffolds | 1586 |
# of scaffolds >= 2Kbp | 1354 |
Scaffold N50 | 100 |
Scaffold L50 (Mbp) | 0.09 |
# of gaps | 362 |
% of scaffold length in gaps | 0.1% |
Three largest Scaffolds (Mbp) | 0.83, 0.48, 0.45 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1613 | 1345 |
transcript | 1461 | 1212 |
exon | 519 | 287 |
intron | 85 | 57 |
description: | ||
protein length (aa) | 487 | 404 |
exons per gene | 2.82 | 2 |
# of gene models | 11940 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Lysøe E, Frandsen RJN, Divon HH, Terzi V, Orrù L, Lamontanara A, Kolseth AK, Nielsen KF, Thrane U
Draft genome sequence and chemical profiling of Fusarium langsethiae, an emerging producer of type A trichothecenes.
Int J Food Microbiol. 2016 Mar 16;221():29-36. doi: 10.1016/j.ijfoodmicro.2016.01.008
Lysøe E, Frandsen RJN, Divon HH, Terzi V, Orrù L, Lamontanara A, Kolseth AK, Nielsen KF, Thrane U
Draft genome sequence and chemical profiling of Fusarium langsethiae, an emerging producer of type A trichothecenes.
Int J Food Microbiol. 2016 Mar 16;221():29-36. doi: 10.1016/j.ijfoodmicro.2016.01.008
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
Funding
This project was not sequenced at the JGI.