Info • Fusarium langsethiae Fl201059

Status

The Fusarium langsethiae Fl201059 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 37.54
Sequencing read coverage depth
# of contigs 1948
# of scaffolds 1586
# of scaffolds >= 2Kbp 1354
Scaffold N50 100
Scaffold L50 (Mbp) 0.09
# of gaps 362
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.83, 0.48, 0.45


Gene Models ExternalModels
length (bp) of: average median
gene 1613 1345
transcript 1461 1212
exon 519 287
intron 85 57
description:
protein length (aa) 487 404
exons per gene 2.82 2
# of gene models 11940


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lysøe E, Frandsen RJN, Divon HH, Terzi V, Orrù L, Lamontanara A, Kolseth AK, Nielsen KF, Thrane U
Draft genome sequence and chemical profiling of Fusarium langsethiae, an emerging producer of type A trichothecenes.
Int J Food Microbiol. 2016 Mar 16;221():29-36. doi: 10.1016/j.ijfoodmicro.2016.01.008

Funding

This project was not sequenced at the JGI.