Info • Fusarium mangiferae MRC7560

Status

The Fusarium mangiferae MRC7560 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 46.29
Sequencing read coverage depth
# of contigs 507
# of scaffolds 254
# of scaffolds >= 2Kbp 124
Scaffold N50 7
Scaffold L50 (Mbp) 2.54
# of gaps 253
% of scaffold length in gaps 1.3%
Three largest Scaffolds (Mbp) 4.75, 4.19, 3.56


Gene Models ExternalModels
length (bp) of: average median
gene 1562 1352
transcript 1447 1236
exon 520 297
intron 67 55
description:
protein length (aa) 482 412
exons per gene 2.78 2
# of gene models 15804


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Niehaus EM, Münsterkötter M, Proctor RH, Brown DW, Sharon A, Idan Y, Oren-Young L, Sieber CM, Novák O, Pěnčík A, Tarkowská D, Hromadová K, Freeman S, Maymon M, Elazar M, Youssef SA, El-Shabrawy ES, Shalaby AB, Houterman P, Brock NL, Burkhardt I, Tsavkelova EA, Dickschat JS, Galuszka P, Güldener U, Tudzynski B
Comparative "Omics" of the Fusarium fujikuroi Species Complex Highlights Differences in Genetic Potential and Metabolite Synthesis.
Genome Biol Evol. 2016 Dec 31;8(11):3574-3599. doi: 10.1093/gbe/evw259

Funding

This project was not sequenced at the JGI.