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Info • Fusarium oxysporum Fo47

Status

The genome sequence and gene predictions of Fusarium oxysporum Fo47 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 1, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Fusarium oxysporum Fo47 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.66
Sequencing read coverage depth 138x
# of contigs 336
# of scaffolds 124
# of scaffolds >= 2Kbp 99
Scaffold N50 5
Scaffold L50 (Mbp) 3.84
# of gaps 212
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 6.20, 5.55, 5.14


Gene Models ExternalModels
length (bp) of: average median
gene 2385 2015
transcript 2226 1856
exon 730 433
intron 80 56
description:
protein length (aa) 463 393
exons per gene 3.05 3
# of gene models 24818


Collaborators

Li-Jun Ma, University of Massachusetts Amherst, USA

Genome Reference(s)

Funding

This project was not sequenced at the JGI.