Info • Fusarium oxysporum f. sp. pisi T415 v1.0


[December 2018] The Fusarium oxysporum f. sp. pisi T415 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum f. sp. pisi T415 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.84
Sequencing read coverage depth 102.1x
# of contigs 1237
# of scaffolds 463
# of scaffolds >= 2Kbp 390
Scaffold N50 6
Scaffold L50 (Mbp) 3.57
# of gaps 774
% of scaffold length in gaps 2.4%
Three largest Scaffolds (Mbp) 6.56, 4.84, 4.68

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42681 40030 93.8%
Ests est.fasta 118995775 116859459 98.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1778 1535
transcript 1606 1392
exon 534 333
intron 88 56
protein length (aa) 468 389
exons per gene 3.01 2
# of gene models 18001


Jeffrey Coleman, Auburn University, USA.


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.