Info • Fusarium oxysporum f. sp. cubense tropical race 4 54006 (II5)

Status

The genome sequence and gene predictions of Fusarium oxysporum f. sp. cubense tropical race 4 54006 (II5) have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 1, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Fusarium oxysporum f. sp. cubense tropical race 4 54006 (II5) release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.55
Sequencing read coverage depth 208x
# of contigs 716
# of scaffolds 418
# of scaffolds >= 2Kbp 275
Scaffold N50 12
Scaffold L50 (Mbp) 1.13
# of gaps 298
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 4.54, 2.24, 2.17


Gene Models ExternalModels
length (bp) of: average median
gene 2439 2039
transcript 2270 1876
exon 747 443
intron 85 56
description:
protein length (aa) 471 398
exons per gene 3.04 3
# of gene models 22487


Collaborators

Li-Jun Ma, University of Massachusetts Amherst, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

DeIulio GA, Guo L, Zhang Y, Goldberg JM, Kistler HC, Ma LJ
Kinome Expansion in the Fusarium oxysporum Species Complex Driven by Accessory Chromosomes.
mSphere. 2018 Jun 27;3(3):. doi: 10.1128/mSphere.00231-18

Funding

This project was not sequenced at the JGI.