Info • Fusarium oxysporum f. sp. radicis-lycopersici 26381 (CL57)

Status

The genome sequence and gene predictions of Fusarium oxysporum f. sp. radicis-lycopersici 26381 (CL57) have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 1, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Fusarium oxysporum f. sp. radicis-lycopersici 26381 (CL57) release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.36
Sequencing read coverage depth 188x
# of contigs 725
# of scaffolds 418
# of scaffolds >= 2Kbp 292
Scaffold N50 7
Scaffold L50 (Mbp) 2.47
# of gaps 307
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 5.06, 4.54, 4.40


Gene Models ExternalModels
length (bp) of: average median
gene 2364 2004
transcript 2207 1851
exon 728 432
intron 80 56
description:
protein length (aa) 459 390
exons per gene 3.03 3
# of gene models 24739


Collaborators

Li-Jun Ma, University of Massachusetts Amherst, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

DeIulio GA, Guo L, Zhang Y, Goldberg JM, Kistler HC, Ma LJ
Kinome Expansion in the Fusarium oxysporum Species Complex Driven by Accessory Chromosomes.
mSphere. 2018 Jun 27;3(3):. doi: 10.1128/mSphere.00231-18

Funding

This project was not sequenced at the JGI.