Info • Fusarium oxysporum f. sp. raphani 54005


The genome sequence and gene predictions of Fusarium oxysporum f. sp. raphani 54005 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 1, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Fusarium oxysporum f. sp. raphani 54005 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.50
Sequencing read coverage depth 145x
# of contigs 2323
# of scaffolds 1218
# of scaffolds >= 2Kbp 1003
Scaffold N50 27
Scaffold L50 (Mbp) 0.45
# of gaps 1105
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 3.04, 2.69, 2.50

Gene Models ExternalModels
length (bp) of: average median
gene 2291 1920
transcript 2137 1767
exon 726 430
intron 81 56
protein length (aa) 450 380
exons per gene 2.95 3
# of gene models 25666


Li-Jun Ma, University of Massachusetts Amherst, USA

Genome Reference(s)


This project was not sequenced at the JGI.