Info • Fusarium oxysporum MPI-SDFR-AT-0094 v1.0

Status

[November 2017] The Fusarium oxysporum MPI-SDFR-AT-0094 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.24
Sequencing read coverage depth 68.91x
# of contigs 128
# of scaffolds 128
# of scaffolds >= 2Kbp 124
Scaffold N50 11
Scaffold L50 (Mbp) 1.62
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.14, 3.38, 2.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44834 41330 92.2%
Ests est.fasta 144124327 141319384 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1791 1556
transcript 1625 1418
exon 540 336
intron 85 56
description:
protein length (aa) 470 392
exons per gene 3.01 2
# of gene models 17445


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.