Info • Fusarium oxysporum MPI-CAGE-CH-0212 v1.0

Status

[June 2018] The Fusarium oxysporum MPI-CAGE-CH-0212 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.72
Sequencing read coverage depth 186.1x
# of contigs 66
# of scaffolds 66
# of scaffolds >= 2Kbp 64
Scaffold N50 5
Scaffold L50 (Mbp) 4.81
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.64, 5.88, 5.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51977 48783 93.9%
Ests est.fasta 186465970 184525199 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1786 1545
transcript 1620 1407
exon 541 335
intron 86 56
description:
protein length (aa) 471 392
exons per gene 2.99 2
# of gene models 17726


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.