Info • Fusarium poae 2516

Status

The Fusarium poae 2516 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 46.48
Sequencing read coverage depth
# of contigs 182
# of scaffolds 181
# of scaffolds >= 2Kbp 181
Scaffold N50 3
Scaffold L50 (Mbp) 8.78
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 11.79, 9.17, 8.78


Gene Models ExternalModels
length (bp) of: average median
gene 1679 1390
transcript 1503 1254
exon 533 299
intron 99 56
description:
protein length (aa) 501 418
exons per gene 2.82 2
# of gene models 14740


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Vanheule A, Audenaert K, Warris S, van de Geest H, Schijlen E, Höfte M, De Saeger S, Haesaert G, Waalwijk C, van der Lee T
Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen.
BMC Genomics. 2016 Aug 23;17():670. doi: 10.1186/s12864-016-2941-6

Funding

This project was not sequenced at the JGI.